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The Human Brain Atlas project

The goal of the Human Brain Atlas project is to provide public access to a large collection of high-quality histological gene expression data from the developing human brain. In the first stage of this project, we have surveyed gene expression in the human brain during the late second trimester, using Affymetrix Human Exon Arrays and tissue samples microdissected from more than 20 regions of four brains.

Although the centerpiece of this project will be high-quality, cellular-resolution images of in situ hybridization, immuno-, and histochemical stainings of developing human brain, we have also included microarray expression data from this project, as well as a large amount of quantitative RT-PCR data.

Supplemental Figures, Data, and Methods from the accompanying paper, "Functional and Evolutionary Insights Into Human Brain Development Through Global Transcriptome Analysis," Johnson et al., Neuron (2009), are available from the About page.

We would like to alert visitors that the website is under construction. At this time, digitized histological images are available for the following genes. In the future, these and all other images will be annotated. You can view these images by following the links below and clicking on the "Images" tab. Quantitative RT-PCR data are also available for these and many more genes in the database, and can be viewed by clicking on the "Data Graphs" tab. If you would like more information please contact us. Thank you for visiting!

Genes with available images:

ACHE
CBLN2
CDH20
CNTNAP2
FAM40B
FOXP2
FZD10
KLHL1
MCC
MSX2
NECAB2
NPY
NRXN3
PAX3
PDE5A
PGM2L1
POU3F2
RNF152
RPRM
SLITRK1
TCF7L2
THBS1
TMOD1
TPD52L1
TSHZ2 (C20orf17)